Omit day and month for end of season table.
| Pos | Team | Pld | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| Northampton Town | 46 | 29 | 12 | 5 | 82 | 46 | 36 | 99 | |
| Oxford United | 46 | 24 | 14 | 8 | 84 | 41 | 43 | 86 | |
| Bristol Rovers | 46 | 26 | 7 | 13 | 77 | 46 | 31 | 85 | |
| Accrington Stanley | 46 | 24 | 13 | 9 | 74 | 48 | 26 | 85 | |
| Plymouth Argyle | 46 | 24 | 9 | 13 | 72 | 46 | 26 | 81 | |
| Portsmouth | 46 | 21 | 15 | 10 | 75 | 44 | 31 | 78 | |
| AFC Wimbledon | 46 | 21 | 12 | 13 | 64 | 50 | 14 | 75 | |
| Leyton Orient | 46 | 19 | 12 | 15 | 60 | 61 | -1 | 69 | |
| Cambridge United | 46 | 18 | 14 | 14 | 66 | 55 | 11 | 68 | |
| Carlisle United | 46 | 17 | 16 | 13 | 67 | 62 | 5 | 67 | |
| Luton Town | 46 | 19 | 9 | 18 | 63 | 61 | 2 | 66 | |
| Mansfield Town | 46 | 17 | 13 | 16 | 61 | 53 | 8 | 64 | |
| Wycombe Wanderers | 46 | 17 | 13 | 16 | 45 | 44 | 1 | 64 | |
| Exeter City | 46 | 17 | 13 | 16 | 63 | 65 | -2 | 64 | |
| Barnet | 46 | 17 | 11 | 18 | 67 | 68 | -1 | 62 | |
| Hartlepool United | 46 | 15 | 6 | 25 | 49 | 72 | -23 | 51 | |
| Notts County | 46 | 14 | 9 | 23 | 54 | 83 | -29 | 51 | |
| Stevenage | 46 | 11 | 15 | 20 | 52 | 67 | -15 | 48 | |
| Yeovil Town | 46 | 11 | 15 | 20 | 43 | 59 | -16 | 48 | |
| Crawley Town | 46 | 13 | 8 | 25 | 45 | 78 | -33 | 47 | |
| Morecambe | 46 | 12 | 10 | 24 | 69 | 91 | -22 | 46 | |
| Newport County | 46 | 10 | 13 | 23 | 43 | 64 | -21 | 43 | |
| Dagenham and Redbridge | 46 | 8 | 10 | 28 | 46 | 81 | -35 | 34 | |
| York City | 46 | 7 | 13 | 26 | 51 | 87 | -36 | 34 |
| 12 May 2016 | Portsmouth 2-2 Plymouth Argyle | |
| 14 May 2016 | AFC Wimbledon 1-0 Accrington Stanley | |
| 15 May 2016 | Plymouth Argyle 1-0 Portsmouth | |
| 18 May 2016 | Accrington Stanley 2-2 AFC Wimbledon | |
| 29 May 2016 | AFC Wimbledon 2-0 Plymouth Argyle |